Protein Info for PS417_03125 in Pseudomonas simiae WCS417

Annotation: potassium ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF08479: POTRA_2" amino acids 71 to 145 (75 residues), 67.8 bits, see alignment E=5.8e-23 PF03865: ShlB" amino acids 382 to 522 (141 residues), 35 bits, see alignment E=1.2e-12

Best Hits

KEGG orthology group: None (inferred from 82% identity to pfs:PFLU0651)

Predicted SEED Role

"Probable activation/secretion signal peptide protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U489 at UniProt or InterPro

Protein Sequence (560 amino acids)

>PS417_03125 potassium ABC transporter ATPase (Pseudomonas simiae WCS417)
MRVLTPMLVLTLSAYAQAETLPNFLNSNDTIRNLPVPNLPADAYRPVTPQTQVPEAPPTQ
GQPLLMDTKVTIRKLQIEGGTVYPLAETAKAYEPLIGHETNLAQLIEATRGITRRYQQDG
YLLSYAFLPQQDFENGLVRVVLVEGYIKDYQQSGDIGSVSAYVDKLANKLLAERPLTRKT
FERYTTLMGRIPGVTLQAQVPPPGTTDGGTRMQITASRKPFTSSMSMTDDNRGGLQALLT
GTSNSQTSMGEQLNISGLFPPGEDKEHYYRVGYSQFINAEGTQLALAAERYRADPNANLQ
LDGGFELKPHQSIDRYSIGLSHPLVASPTESLTLGTRLYAVDQTTRYKLVGYPQRFDIET
NLRALAFEGDWRKSDTRQLRILSAGLYQGINGLGARTHSDFEGLKPDLDFFRLRLSGVQS
DKFFDNWQGVLSGAFYWSNDTLPDSERATFGGQNFGRGYPDDQGSGDKGWGVAYEFNYSY
NRAGDWVRILQPYVVFDRAKSWFNDLPVKSNDMSSAAVGLRFGDNKYYNIALEAAKPMSD
IALDSFNRRPRYTLSFSYQL