Protein Info for PS417_03090 in Pseudomonas simiae WCS417
Annotation: type II secretion system protein F
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K12510, tight adherence protein B (inferred from 90% identity to pfs:PFLU0644)Predicted SEED Role
"Flp pilus assembly protein TadB" in subsystem Widespread colonization island
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1N7TXH6 at UniProt or InterPro
Protein Sequence (293 amino acids)
>PS417_03090 type II secretion system protein F (Pseudomonas simiae WCS417) MTGPVLLLICLLLIALSFWQFHHGLRKARTDRVLERLGDGQPETQEPSTTWTGLEHMFQR AGLGKPTDRLGLWLSAWVVGVLLGWLLADGLGLIAMIVGPPLLLRVYISWRYQRRVQRMV EQLPQLLDHSVRSLKSGRTLADSVLGGIEGVEAPLKDAMGRVQRNVRMGVSLPDSVSDFA EFYEQDEFRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLKAMTGETRMTAYVL GGLPVLIVGYFMMVNPSYLMTMWNDDTGRIMLFSALAMDLGGTFVMWRMLRSV