Protein Info for GFF6044 in Variovorax sp. SCN45

Annotation: FIG00933533: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 617 transmembrane" amino acids 30 to 55 (26 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details PF01435: Peptidase_M48" amino acids 155 to 332 (178 residues), 46.4 bits, see alignment E=2.1e-16

Best Hits

KEGG orthology group: None (inferred from 87% identity to vpe:Varpa_1379)

Predicted SEED Role

"FIG00933533: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (617 amino acids)

>GFF6044 FIG00933533: hypothetical protein (Variovorax sp. SCN45)
MDRADFVHLVRLSEHASADDSARYRRSVAAFAALGYLWVLGCLALAVGLIAWVLLPIREE
RFTFTRGWLLLFAGGLLWATMRALWVRFDEPEGVELQRDDAPALFEALDRIRARIKGPPV
HHVYLDDEFNASIRQVPRFGLFGGAVNSLNIGLPLLMMLDRRRLLSVLAHEYGHLRGNHG
KLSAWIYRTRLSWLKLDASLQRDEGVMALVSQAFFRWYFPRFAAKTFALARQDEYEADRI
SGRLLGTSVAAAALTEIAIKGSWYANEFWPWHWARAEHEPQPPGPFAALRKRVRTPPADD
FARQALREAMRRVSDLEDTHPVLRDRLEALDQKAALPEWSVRPALELLADRKKWIEYFDN
RWCRAHAADWKQHHAHRSRIRERIGVLAARGERNTPDEMVEWADSERRLNPSAPVRTRYE
SALRIAPEHPGALRGLVQMLPATDRAARLVVLERLHGSGAASRWWAAKSAVASLEDPDAG
PHDEVALKLWRGRLKEAEEAETRAWEEITGTPFFSQISRHDLNDYELGELRADLVRCLPA
SRAWLVRKNLREFPWRRAYVVFVELPGLDDEDRWHMCRQLEQTLTLPGAALVLWAGHSPT
LEDIEREAFGAVWARTA