Protein Info for GFF6040 in Variovorax sp. SCN45

Annotation: LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR01023: ribosomal protein bL33
  • amino acids 4 to 57 (54 residues), 81.2 bits, E=2.6e-27
• PF00471: Ribosomal_L33
  • amino acids 9 to 55 (47 residues), 61 bits, E=5.7e-21

Best Hits

Swiss-Prot: 93% identical to RL33_DELAS: 50S ribosomal protein L33 (rpmG) from Delftia acidovorans (strain DSM 14801 / SPH-1)

KEGG orthology group: K02913, large subunit ribosomal protein L33 (inferred from 100% identity to vpe:Varpa_1382)

MetaCyc: 68% identical to 50S ribosomal subunit protein L33 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

No annotation

Protein Sequence (57 amino acids)

>GFF6040 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent (Variovorax sp. SCN45)
MATSKGGREKIKLESTAGTGHFYTTSKNKKTMPEKMSIMKFDPKARKHVEYKEIKLK