Protein Info for PS417_03050 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 648 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 135 to 155 (21 residues), see Phobius details amino acids 185 to 201 (17 residues), see Phobius details PF13400: Tad" amino acids 11 to 57 (47 residues), 37.6 bits, see alignment 2.2e-13 PF09977: Tad_C" amino acids 59 to 156 (98 residues), 25.5 bits, see alignment E=2.2e-09

Best Hits

KEGG orthology group: None (inferred from 71% identity to pfs:PFLU0636)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1TYB6 at UniProt or InterPro

Protein Sequence (648 amino acids)

>PS417_03050 hypothetical protein (Pseudomonas simiae WCS417)
MSPRLGSSQRGAIGLMAAGTLAVALVFMLLAVDSGRLYLEKRKLQSIADTSALEAASRGG
LCTPTTTANDYAKENAARNGFTVVAGDSSRGLAVTCGTLASNASNIRVFTVDATKNDAVR
VVATRTVMASIASGIWSLFGGAPVAAQTVLTATAVAASAPPVAQLTIRTALASVNSGNSP
LLNMVIGNLLGGSLSLTAAGWNGLLTTNVNLLSYLDQLAIELNVKAGDYDALLSTAVSAS
QLLDAAVKVLQKNGAVATAVINDLITVKAIAPNTQLLKVGDLLKVATGTPAAALNTSVQL
FQLLETVAQLSSSKSAVSAAAQVNIPLVGTVSIQTKVIEPPQLSAIGNPAKAKAGLLNNP
PTDQIVVRTAQVRTLVKIDAPIIKAVSGVTSILTGLATPVSKVVGGLLNLNLLDVVAGVV
CLVGCNVADVDINQTLSIYIEAASAESHVTDFNCATPATKSLTVRATTSLATLGVGYVEP
VSAFSSSAAVNVQPVRLIDFGQRFCLLTLVCGPRTAGVGGGLNLRALSTVGAQTNTLVFS
PVNDINAATIYKSPPGTADILFSLGNTLNGLQVTYVPPSGSTPNPANGTVTNALATIISS
VVGLVQNVLAPILDPIVNTLLSALGISLGNAEVGANLSCHMGRAYLVI