Protein Info for GFF5972 in Variovorax sp. SCN45

Annotation: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 PF00005: ABC_tran" amino acids 38 to 167 (130 residues), 59.1 bits, see alignment E=3.9e-20

Best Hits

KEGG orthology group: None (inferred from 75% identity to vpe:Varpa_1458)

Predicted SEED Role

"ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (214 amino acids)

>GFF5972 ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA (Variovorax sp. SCN45)
VNTTPPFPPILQLQDIGFAYPGQSAIASGWTASIGPGVTLLHGDTGAGKSALLQVIAGVL
PAGGGRLTVAGTRLDASPEAYRRQVFFVDPTTDRFDQLTARECTRQLTEGDTGFDPAAWQ
ALADGFSLEPHLDKKLFMLSTGSRRKVWMAAGLASGRPLVLLDEPTAGLDAGSTRCLWQA
LTGVAAQERRAVLVASAARIDTVPLAATIALPLD