Protein Info for GFF5947 in Variovorax sp. SCN45

Annotation: Large extracellular alpha-helical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2008 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF11974: bMG3" amino acids 527 to 639 (113 residues), 79.8 bits, see alignment 3.3e-26 PF01835: MG2" amino acids 648 to 738 (91 residues), 47.4 bits, see alignment 5.1e-16 PF07703: A2M_BRD" amino acids 1056 to 1239 (184 residues), 79 bits, see alignment E=1.1e-25 PF00207: A2M" amino acids 1299 to 1384 (86 residues), 42.4 bits, see alignment (E = 1.2e-14) PF17973: bMG10" amino acids 1867 to 1992 (126 residues), 88.8 bits, see alignment 9.1e-29

Best Hits

Predicted SEED Role

"Large extracellular alpha-helical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2008 amino acids)

>GFF5947 Large extracellular alpha-helical protein (Variovorax sp. SCN45)
VNRFLPTLLLAGGALLSGPGHALQITSLTPQGEVARVRQIVAKFDQPAVNFGDPKAPAPL
AVSCTDAQAGKGTGRWTDAKAWVYDFENDLPPGVRCTVTRIPTFKPASGELTGPERYQFN
SGGPFVRGYMPGSYSRIDEQQMFVLELNGAATLDSVRQNVWCSADGVGERIPVKLLDGDQ
RAGLLKAFGRDKAAEKEPLRFITMQCNRTLTPGAKVQIVYGKGVATPSGVPNNVERRLEF
QVREPFAASFTCERENAQAACLPLRPMQLNFNAPVTRKLAAQIELKGGDKTVKAQLSDGG
GTQSDDDVVNDVYFGPPLAESTQFSIELPSKFEDASGRPLASPGSFPMKVGTGMMPPLAK
FAASPFGVVERLAEPDTPAMMPVTVRRVEPQLMVQALTPGKVSDMNPKTDAEIIAWFRKV
RRYDNYTISREQARKDVKGPLPPVIDKDDRTTLQTRMLSLLSGQAGVKTLDMPKSDAGDP
RPFEVIGIPLTPGFHVLEIASQKLGEALLDERYNAGRTMYVRTTALATNLAVHFKLGREN
SMAWVTTLDKGKVVAGAEVRVSSCDGKAVASGTTDANGIVMLNGISPQAPSCNGPNEYDS
GAWFVSARAKDDKGVEDLAFTWSDWQRGIEPWRFNVPTNLQAEPDRIAHTIFDRTLLRAG
ETVSMKSLIRTQTSKGFGLPENRPDTLVITHVGSGQRFTQPLNWRKTATGGLSAENSFAI
PPAAKLGVYEVMLRTGGGKDGDSEGDGGDNGDGSYARSFSTGMFRVEEFRLPVLEGRIAP
TEKKPLVAATSVPTDVQINYVAGGGAANLPVRVSAMVRGKSLSFADYDAFSFTPPRATQG
DGTEAATPASDSNAGEEDINSVSDTRVIADKLPLTLNKDGAGKVTIDKVPKVKSARELLL
EATYADPNGEVQTIRSTQTLWPASVIAGIKTEGWVSTSQKLKFQALALDLTGKPQAGVTL
NVRAVARITTTSRKRMVGGFYTYDNKTETKDIGTVCSGKSDARGLLLCESELKEAGEVEL
IASATDSDGRDAKAVSSVYVTKQGELWFGGEDNDRIDVLPEKKSYQPGEVAKFQVRSPFR
FATALVAVEREGIIETHVVQLDGKDPTVTLEVKPEWGPNAYVSVLALRGRLREVPWYSFF
TWGFKSPREWWTAFWYEGKEYVAPTAMVDLSKPAYRLGMAEIRVGTQAHQLDVTVTSDKP
SYPIRSKAQVTISAKLPDGKPAAGAEVALAAVDQALLELMPNDSWNLLTAMLQRRSWGVS
TSTAQMEIVGRRHYGRKAVPAGGGGGKGQTRELLDTLLVWNPKVMLDANGQAVVTVPLND
ALTTFKIVAVADSGVGLFGTGQASIQATQDLQIISGLPPLVREDDQFRAQITLRNTTQKP
MKVEATPRATLLTLEPQTVDIPAGEAREVAWNVTAPAQLAQTRAEAILWEIEAKDTIGGA
RDALKVRQRIVPSVPLTVQQATLVQLDGPFTLDVAPPADALPGRGGLKLSLQPKLAEGLP
GVRDWFANYPFICLEQKTSKSVGLRDAKMWQGVLATLPTYLDSDGLANYFPPRDGEANRG
SDILTSYLLAATNEAAALDPAFALADDVRAPMESGLIAFVEGRITRDFWSPRKDLDVRKL
AALEALSRYGKAKGSMLGSITIAPNQWPTSAVIDWLNILKRVQDVPQRQQRLDEANNVLK
ARLSYQGTKLIFSTEQDDYWWWLMTNGDVNTARLLLSVMDDPSWKDDIGKLANGFIGRQQ
NGAWHTTTANLWGGLALEKFSKVFESTPVSGITAATLGAVKAQVDWSKVERVKASDPAGA
PNQTTFFGAPASPGNLKNNTMFLPWAASPSGAPVRDTLLVTQQGTGKPWLTLQSIAAVQL
KAPFAAGYAIKKTVTPVEQAVAGKYTRGDVLRVTLEVNASADMTWVVISDPIPGGATILG
SGLGRDSQIATQGEKKTGAGWPAFEERSFEAFRSYYEYLPKGVVKMEYTVRLNNVGDFAL
PPSRVEAMYAPEMFGETPNARVKVEAAK