Protein Info for GFF5892 in Variovorax sp. SCN45

Annotation: Lysine exporter protein LysE/YggA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 119 to 143 (25 residues), see Phobius details amino acids 154 to 179 (26 residues), see Phobius details amino acids 191 to 209 (19 residues), see Phobius details PF01810: LysE" amino acids 17 to 209 (193 residues), 128.4 bits, see alignment E=1.2e-41

Best Hits

KEGG orthology group: None (inferred from 92% identity to vpe:Varpa_0632)

Predicted SEED Role

"Lysine exporter protein (LYSE/YGGA)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (219 amino acids)

>GFF5892 Lysine exporter protein LysE/YggA (Variovorax sp. SCN45)
MPDLPHLLAFIAAGWLLNLTPGPDVLYVVSNSLRSGVRAGIMAGLGITTGCFVHIFAAAV
GVGTLMATSATAFTVLKYIGAAYLLYLGVRMVLSRAKPPADLQAEAAAAGERSLKAIFLG
GFWTNVLNPKVALFFLAFVPQFIAPGAGNTALCFVLLGVLFNVNAIPVNVGWAVAAGWMA
RRSAVQKGMHWLDRAAGVLFIGFGLKLAFTDAPAVRVGR