Protein Info for GFF5861 in Variovorax sp. SCN45

Annotation: Fe2+-dicitrate sensor, membrane component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 PF16220: DUF4880" amino acids 30 to 70 (41 residues), 56.5 bits, see alignment 2.1e-19 PF04773: FecR" amino acids 130 to 223 (94 residues), 68.1 bits, see alignment E=7.4e-23

Best Hits

KEGG orthology group: None (inferred from 52% identity to axy:AXYL_05331)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>GFF5861 Fe2+-dicitrate sensor, membrane component (Variovorax sp. SCN45)
MATESRDRPARVLFRPAADAPRPIDSAVVDQAVAWLVKIQSGGASAADSAACDIWRQAHP
DHERAWLRLCGLGRDLREGTQGVAPQIARSALRGADRQQRRWALKSIAGLGVGAWGAWAL
RHDIAALGADHRTGVGERRAVVLSDGTRLVLNTRSAVDVRFDASARTLRLLGGEIMVTTG
KDPARRPFIVLGRDGRMVPVGTRFVVRAFDEAASELTVLEGEVDLSAGEQSQVTRVPAGS
RVRFGPASVGALNRADERAAAWTDGTLVVERMRLADFLGELGRYRGGVLRCDPEVGGLLV
SGAFPLADTDAVLAMLEETLPVRLRSMSRYWVTVAAR