Protein Info for GFF5860 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 811 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF07660: STN" amino acids 72 to 121 (50 residues), 37.4 bits, see alignment 2.7e-13 PF07715: Plug" amino acids 174 to 272 (99 residues), 60.5 bits, see alignment E=3.3e-20 TIGR01783: TonB-dependent siderophore receptor" amino acids 177 to 811 (635 residues), 312.2 bits, see alignment E=4.1e-97 PF00593: TonB_dep_Rec" amino acids 350 to 780 (431 residues), 174.7 bits, see alignment E=9.5e-55

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (811 amino acids)

>GFF5860 no description (Variovorax sp. SCN45)
MAFPARPGRRFRPSPLALVARASCLAAALAAGAPAAWAQQGAPVAGASRAYAIDAGSLDS
VLGRFGREANVMIAIDPALTQGLQSPGLQGSFTVPGALDKLLAGSGLEAVAGAGGGWRLR
RGAVATGAESRAGTSPQHADTAGATLAPVVVSAQREKLYDVQDVNAGALGVRSLQDLPFA
VGSYTVDTIEAQRARTALDVLRNDPSVTPTSGFSSFDGVAVRGFAANSFNNVRRDGLLAN
IYSDVPLENKERVDVLKGLSGFLYGVGEPSGIVNYVIKRPTRERFASVTAEVRSYGGRYA
SVDAGGPLDATGTVGYRFNAATEKVGDFTHFGDLKRDFLAGAVDIKINRDALLQLDFDWQ
KKSLAASGMIGPRNDGTVVSARSFDPRTLVGQPWGQYKTDAWNIGARLDYTLNSQWDLTA
QLGFSRSKRNALFFNASQVAPNGDVLKGNTRYEGEPYPTAAGQLFATGRFSTGSIGHEAV
IGYSYSRLGSPDGDYLRFPQFIGNIYRPLPYLQPNLPDDTHLPSSTARQSSVFVSDTLSF
TPQWQLLLGARYIDYSSDIGSKYDGTPRYSTRVTVPTLSLMYKPSERTTVYATYGEGFEQ
GAYGPSYADNALQKLGPIKSRQYEIGVKSRVRDGLMLTAAVFDMDKPLQAVTPSDNIFRQ
QGRQRHRGVEFTANGEITPQLSGIAGVAWLDAEQRDTGDAALEGRRPSNVARFQANVFLD
YRLSSVPGLSFNTGIYHVGNRPLDRANTMIVPAFTRWDLGTAYATRLAGVPSVIRLSIEN
AANRRYWSSVNYGGVTQGNPRIVRLAMTMNF