Protein Info for GFF5847 in Variovorax sp. SCN45

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 884 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 30 to 49 (20 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 155 to 178 (24 residues), see Phobius details PF05650: DUF802" amino acids 320 to 372 (53 residues), 60 bits, see alignment 1.3e-20 amino acids 375 to 427 (53 residues), 57.5 bits, see alignment 7.7e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (884 amino acids)

>GFF5847 putative membrane protein (Variovorax sp. SCN45)
MTRFLPHAVFAAGLAVVGWVAVGYVGANPLALAVTALVAAFYLMGALELRRFQQATDTLS
RAVAELSEAPPSLGAWLASLPASLQNAVRLRIEGERVGLPGPALTPYLAGFLVLLGMLGT
FLGMVVTLNGTGLALDSATDLQAVRSSLSAPVKGLGLAFGTSVAGVAASAMLGLMSALCR
RERLQAGQLLDSRIATTLRVFSQVHQREESFKLLQQQALAMPELVGQLQAMMAALAQQSQ
AQNDRLISSQDSFHGKAEAVYAGLATSVDQSLRQSLTESARIAGAAIQPVVEATMAAIAR
ETAALHGTLSQTVQQQLEGLSSRFAATTAGVADTWQTALAEHRQTSEALSGEVRGSHDRF
AETFAQRSAALVDNVAAQLERTVGSVSNTWNGALAEHQRVSEKLSADSQQALTAAAATFE
QHSASLLRTVGEAHAELQTDIASRDEQRLAVWTQSLAAMAAGLKDEWQQAGAYAAGQQQH
LLDTISQVSTRDEQKLAAWTQSLAAMAAALREEWKQAGTYAAGQQQHLLDTISQVSSRDE
QKLAAWTQSLADMAAALREEWQQAGVHATGQQQLLLDAISQISSRDEQRLSAWTGSLASM
AAALKEEWQQAGAHTTGQQQQLLDAISQISSRDEQRLSAWTGSLATMADTLKDEWQQAGA
QSASQQHQLLEQVAQTAREMSSQADAHAKATVAEIAQLLQAASEAPRAAAEVVAELRQKL
SDSMARDNAMLEERSRILETLSTLLDAVNHASIEQRAAVDSLVAASAEVLERVGGRFTEQ
VEAETGKMTGIAAQITGGAAEVASMGEAFGLAVQMFSQSNDKMGAQLQRIEAALGKSIAR
SDEQLAYYVAQAREVIDLSIMSQKQIVEDLQQLASRQAAVGSEA