Protein Info for GFF5832 in Variovorax sp. SCN45

Annotation: MoaF protein precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 PF10703: MoaF" amino acids 11 to 116 (106 residues), 80 bits, see alignment E=1.1e-26 PF17409: MoaF_C" amino acids 149 to 259 (111 residues), 128.6 bits, see alignment E=9e-42

Best Hits

Predicted SEED Role

"MoaF protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>GFF5832 MoaF protein precursor (Variovorax sp. SCN45)
MSTDTTTKPADWKTYDQFALGIATNRLPPTDALAGQTLVLALPDFRLTLKPRTQHTIDWQ
EECARGGQAQGDWYEAIEVAPDTFFLDITQGSRPTEALTVVLNTRTRRVLAIRCRIVSAE
EAAGQPRVPQDFWPGTLEGGAAASGTEPHATRDLIGLRTWQTYSPNHTYEHTYLSSERYA
WQCLVGVQRGHGDVDLASYWKFDDGQYVFTFREFLIPVASVFFFDFTQGRSTGKFLGVTG
AGEVANNPAGAFMRKAAQTFYPPEFGPV