Protein Info for GFF5822 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 PF13676: TIR_2" amino acids 189 to 308 (120 residues), 98.1 bits, see alignment E=5.4e-32 PF01582: TIR" amino acids 192 to 283 (92 residues), 30.7 bits, see alignment E=2.6e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>GFF5822 hypothetical protein (Variovorax sp. SCN45)
MATGTAAKKAPPKRGLHGTSNSHRFEPAKLDSLFVVLDAIAWLDAPTSGEVAQFAGIDPR
TAGKLLKNASQIGLVDAVASGYVLVLPYPYKGSQDQKQAVVKEALVRLPLLTGVRQFLRL
GDKTEVALRKAATVAGIVPFSSADLNPLLEWAQSLGALQPSLIAEDLVDAAESKKERRHI
EEKDQRVAFLSHSSADKAFIRQLAADLTANGISVWLDEQRIRVGDSIPEKIAQGLAESDF
FLIGMSHKSSESAWVQKELNNALMTEVKRRNVHILPLKLDDTPMPLIIGDKKYADFSKSY
KAGLDELLTALKGSV