Protein Info for GFF5811 in Variovorax sp. SCN45

Annotation: Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1056 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 348 to 365 (18 residues), see Phobius details amino acids 372 to 393 (22 residues), see Phobius details amino acids 399 to 423 (25 residues), see Phobius details amino acids 443 to 466 (24 residues), see Phobius details amino acids 475 to 498 (24 residues), see Phobius details amino acids 540 to 560 (21 residues), see Phobius details amino acids 869 to 887 (19 residues), see Phobius details amino acids 894 to 914 (21 residues), see Phobius details amino acids 919 to 941 (23 residues), see Phobius details amino acids 966 to 986 (21 residues), see Phobius details amino acids 999 to 1024 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1024 (1022 residues), 1023.3 bits, see alignment E=0 PF03176: MMPL" amino acids 304 to 499 (196 residues), 33.1 bits, see alignment E=3e-12

Best Hits

KEGG orthology group: None (inferred from 82% identity to hse:Hsero_2483)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1056 amino acids)

>GFF5811 Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like (Variovorax sp. SCN45)
LSISATFIKRPIGTTLLALAILLVGAAVFPLLPVAPLPQVDFPTIQVSASLPGASPETMA
SNVAQPLERNFSLIAGLSQMTSTSGLGNTQITLQFDLDRSIDAAALDVQAAINASTGQLP
ANLPSPPTFRKVNPADAPILILSVQSKTLPLTEVNDYADNILAQQISQISGVGLVNIGGV
QKPAVRVQVDPAKLAALGLSLEDVRTVLASATVNAPKGTIDGPNQSFTVYTNDQLLKAQP
WNDVVLAYRNGAPIRVRDLGVAVDGPENSKIAGWAYAGAAAPAGSNVQNGRSIVLAITKQ
PGANVIETVDRINAALPRLKASIPPTVDVNAIIDRTQTIRASVKDVEFTLLLTIALVVAV
IFVFLRNVPATLIPSVTVPLALLGTVGVMYLLGYSLDNLSLMALTIAVGFVVDDAIVMLE
NIYRYVEEGMTAMEAAYKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT
LTIVVSVIISLTLTPMLCSRFLKNEHGNKHGRLYQLFERGFDAMLNGYKRGLHVVLDHQF
ITLMVFIATVAATGVLFAVIPKGFFPQQDTGFISGFAESAQDASFASMNARMIQLADVVR
KDPDVTGFGMNGSSSTYNTGNFYISLKPKDEGRTATADEIITRLRPQLAKVQGVNLFLQA
GQDIRVGGRASRTQYQYTVTDADLDELNTWAPKLLARFKQLPELTDLATDQQNAAASAVL
TIDRDRASSFGISPATIDATLYDAIGQRQVAQYFTQLNSYHVVLEVTPGVQQDPALFSKL
YLSSPITGQQVPLSTFVKVDTSKTAYLSISHQGQFPAVTISFNLAPGVALGDAVNAINKA
QAEMGLPQSLTGSFQGTAQAFQDSLATQPYLIAAALVAVYIVLGLLYESYIHPLTILSTL
PSAGVGALLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALKAEREQGMSPHDAIY
QACLLRFRPIMMTTMCALLSGLPLMLGHGSGSELRRPLGYAMVGGLILSQALTLFTTPVV
YLYLDRAHYWYLSRKEARKARKAAKEGKAPVPAEAH