Protein Info for GFF5772 in Variovorax sp. SCN45

Annotation: Flagellar biosynthesis protein FlhF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 845 TIGR03499: flagellar biosynthesis protein FlhF" amino acids 13 to 307 (295 residues), 261.8 bits, see alignment E=6.1e-82 PF00448: SRP54" amino acids 221 to 411 (191 residues), 127.8 bits, see alignment E=2.1e-41

Best Hits

Predicted SEED Role

"Flagellar biosynthesis protein FlhF" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (845 amino acids)

>GFF5772 Flagellar biosynthesis protein FlhF (Variovorax sp. SCN45)
LNSQQNDVRTTARKFVAATSREALRMVREALGADAIVLTHRATAEGVEIVAMVEGDVQGV
ARNAAPVTAAVAPAPAPVPAPAPAPAPAPAPVIAPAAAPVAQVAPAAPVPRPVPLHQPVA
APAPVPHGDTVLNELHSMRGMIEEQLASVVWNDKQRRDPVRGRLLRTLLGAGFSARLSKA
MLEKLPTGQTYAEGMAYVRAELIRAVPVHEDEDALFAQGGVYALMGPTGVGKTTTTAKLA
ARCVMRFGADKLALVTTDSYRIGAYEQLRIYGQILNVPVYAVKDAADLHLVLQDLRDKHM
VLIDTVGMSQRDRAVPEQIAMLGQSPRPVKRLLLLNATSHGDTLNEVVHAYRHGNDLTGC
IFTKVDESTHPGALIDTVIRHRLPVHYISSGQKVPENLMQADRAQLVDSVFQPRQHNPLF
VPAESDLQEEPAGAAPSAQVVQVVQAQGEADRLRLKYQNLIRAMAHDAQELATAASALAG
AQIGFERARGLWRNAADEDIGQKAVLQDLMVHARGEIAAGCETHVLALCGQVGLRSNEGG
DAYECHGSLLLSDRSGLPLAAPNQWLSTAATRGMKDAARKPGARQVPWLRQQDFGDKPMV
HVLTRLPGLESMLQWQTAGQRWLARAPGSTAVIDARTGAPDTLARLDLEFSEGLPVRFRG
KAALRCEAHADVVLRFNAAAVAAGVGREAMPALRCVATRMLDARSGNVLAQSYALTNIGT
EVSARQLAQWQGWANDAEPCFRLLRDGVQLIGGIGELGDPNIMKRLLIAGQMTTTVWRLL
QAEGEWADRTRMLLGQLTARPARNGRLMSGSALYAGVGKLFLLLEALGTESTAPVQAPRA
LEPQG