Protein Info for GFF5746 in Variovorax sp. SCN45

Annotation: Flagellar protein FliJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 TIGR02473: flagellar export protein FliJ" amino acids 6 to 142 (137 residues), 96.7 bits, see alignment E=8.3e-32 PF02050: FliJ" amino acids 19 to 142 (124 residues), 104 bits, see alignment E=3.3e-34

Best Hits

KEGG orthology group: K02413, flagellar FliJ protein (inferred from 73% identity to vap:Vapar_4172)

Predicted SEED Role

"Flagellar protein FliJ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (151 amino acids)

>GFF5746 Flagellar protein FliJ (Variovorax sp. SCN45)
MTRKLPLGMLIDLAHTQTDDAARRLGALQSAHLNASQKLELLLQYRQDYHDQLDALMRGG
LPSSQWRNYRNFLGTLDGAIEQQRAIAAQTETRLDNGRTDWQHQKRRLSSFDTLAERVRM
QELMAEAKREQRDSDERAARKFFDRASHPTL