Protein Info for GFF57 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details amino acids 33 to 36 (4 residues), see Phobius details transmembrane" amino acids 20 to 32 (13 residues), see Phobius details amino acids 50 to 67 (18 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details PF04892: VanZ" amino acids 43 to 121 (79 residues), 41.1 bits, see alignment E=1.3e-14

Best Hits

KEGG orthology group: None (inferred from 50% identity to pol:Bpro_1880)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>GFF57 hypothetical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
VVLMGFSLRRVQRLARGLAVLLALAVPLALWIGGAQPFAVGLVPAPWDKLAHMTVYAVLS
CAIGFASGRRGVSAMLIGFTGALLVGVLDEASQMRLPGRSADIDDLVADAVGAALGTTVL
AVRIRLREWVASHTAQ