Protein Info for GFF566 in Variovorax sp. SCN45

Annotation: Type IV fimbrial biogenesis protein PilV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details PF07963: N_methyl" amino acids 15 to 40 (26 residues), 24.3 bits, see alignment 8.7e-10 TIGR02523: type IV pilus modification protein PilV" amino acids 18 to 153 (136 residues), 86 bits, see alignment E=1.7e-28

Best Hits

KEGG orthology group: K02671, type IV pilus assembly protein PilV (inferred from 70% identity to vap:Vapar_3106)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilV" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (185 amino acids)

>GFF566 Type IV fimbrial biogenesis protein PilV (Variovorax sp. SCN45)
MLSLSVSIRRRPLQRRGQAGFSMIEALVAVLVLSFGLMALAGFQLRVLADSAGASKKNIA
VQLAGDMADRIRSNLVTGPVAGNPYVSDWSLAGADAPKPSCAEADAACSASELAAYDVWS
WKRTVAAALPGGVADIQSKATAGGLLFVHIAWNESAVANPIPPESSWNCPADKACMEVTV
AVPQP