Protein Info for GFF565 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative ribokinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 PF08220: HTH_DeoR" amino acids 5 to 55 (51 residues), 53.7 bits, see alignment 2e-18 PF00294: PfkB" amino acids 92 to 382 (291 residues), 229.1 bits, see alignment E=1.2e-71 PF08543: Phos_pyr_kin" amino acids 254 to 376 (123 residues), 54 bits, see alignment E=2.5e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to sew:SeSA_A3738)

Predicted SEED Role

"Putative ribokinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>GFF565 Putative ribokinase (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MKFERHHRILKELSISGVVKVSNLAKSLKVTKETIRSDLNELAGQGYLTRCHGGAFITLD
SLDNVAKNEIAYVLEKYESAQKIKKGLSAMKNNVCVIGSFNVDIISYLPRLPSTGESLLA
DKFIFSPGGKGCNQALAASYADSDVHFITKVGSDHFSDYAINFINSSKIHKSVIYQTKET
QTGTATIMVNGDTGDNVIAIYPGANMTISPDEITIQKEAIVHSDIVLVQLETNYEALQQT
IRLAQKNDIPVIINPAPYNDMVNTIIDNIDYITPNETEAGLLANMAVNDIESAKCAAKII
HQKGVKNTIITLGSKGSLAYDGTQFIYSPAFPAVVKNTAGAGDAFNGALASGLAKGKSLA
SALCYASAFASLAVETPNASDMPENDSVLHRIQGSHYKQTISTH