Protein Info for PS417_02865 in Pseudomonas simiae WCS417

Annotation: peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 transmembrane" amino acids 15 to 39 (25 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details amino acids 416 to 441 (26 residues), see Phobius details PF03929: PepSY_TM" amino acids 13 to 396 (384 residues), 255.1 bits, see alignment E=1.3e-79 PF03413: PepSY" amino acids 61 to 117 (57 residues), 33.6 bits, see alignment 3.9e-12

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU0594)

Predicted SEED Role

"Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZ62 at UniProt or InterPro

Protein Sequence (460 amino acids)

>PS417_02865 peptidase (Pseudomonas simiae WCS417)
MTPQKISFYNLAWRWHFYAGLFVAPFMVLLALTGIIYLFKPQLDPLMYGDLLKVQTAEHA
LSADEQLQRAKAAYPKAAISKYLPPADSTSSAQFVMHNQGREVTVFVDPYRGNVLGEQDA
KYNLQAIARALHGELMIGTVGDRLVELAAGWGVMLVVSGLYLWWPRGKSSAGVLWPRFNS
RGRVFWRDMHAVTGFWGASLLLVMLLSGMTWTGFWGKQYADVWNTFPAAMWNNVPQSDQQ
ARVLNTASQQTVPWAMENTPMPMSGDHAEHMNHGAMHSAPAAPTLRLQQVVDLATARHVE
PGYSITFPTTAEGVFTVAVFANDPRNDATLHVDQYIGKVLADVRWEHYNAVARATETGVM
LHEGKMFGWVNQLIVLLICLMILLSAVSGVVIWWKRRPQGGLGVPPLRHDLPKWKTAMAI
MLALAIIFPLVGASLILVWALDRLVLSRLLGQRESASGSA