Protein Info for GFF563 in Methylophilus sp. DMC18

Annotation: Flagellar basal body rod protein FlgB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 140 TIGR01396: flagellar basal-body rod protein FlgB" amino acids 6 to 138 (133 residues), 113.8 bits, see alignment E=3.4e-37 PF00460: Flg_bb_rod" amino acids 9 to 39 (31 residues), 29.1 bits, see alignment 3.9e-11

Best Hits

Swiss-Prot: 45% identical to FLGB_PROMH: Flagellar basal body rod protein FlgB (flgB) from Proteus mirabilis (strain HI4320)

KEGG orthology group: None (inferred from 67% identity to rcu:RCOM_2032010)

Predicted SEED Role

"Flagellar basal-body rod protein FlgB" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (140 amino acids)

>GFF563 Flagellar basal body rod protein FlgB (Methylophilus sp. DMC18)
MINKLDAALNFHQTALRVRNERQELLASNIANADTPQYKARDIDFKAAMQAAMHPASSTG
RATGGLQKTDSGHMQGQPNQGYAGPGDPLFRTVTQASVDGNTVDMDAERNAYVDNGIRYE
ASLTMITGQIKKMLTAINGQ