Protein Info for GFF563 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 40 to 60 (21 residues), see Phobius details amino acids 80 to 97 (18 residues), see Phobius details amino acids 103 to 125 (23 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 164 to 182 (19 residues), see Phobius details amino acids 201 to 222 (22 residues), see Phobius details amino acids 233 to 252 (20 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details PF04657: DMT_YdcZ" amino acids 10 to 154 (145 residues), 103.9 bits, see alignment E=4.6e-34 amino acids 169 to 303 (135 residues), 60.5 bits, see alignment E=1.1e-20

Best Hits

KEGG orthology group: K09936, hypothetical protein (inferred from 99% identity to stt:t3972)

Predicted SEED Role

"Putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (323 amino acids)

>GFF563 Putative inner membrane protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MNKNKYSTPLLMLATILAGMLSPMQSAVNGQLGHWLQDGNACAVISFASGLVVMFFIIIA
RKETRQQFASIPTLIKKRKIPLWNWFAGLCGAMVVFSEGASASALGVATFQTALISALLL
SGLLCDRFGIGVEEKKYFTPWRITGALFAVIATIFVVSPQWHSTSFILLAILPFLAGLLA
GWQPAGNAKVAEATGSMLVSITWNFIVGFCVLGAALAIRIALGHVTIQLPDTWWMYLGGP
LGLLSIGLMAILVRGLGLLMLGVASTAGQLLGSVLIDELIPSLGNTVYLVTIIGTLFALV
GAIVTTIPEYRASKMAQRIEVSE