Protein Info for PS417_02825 in Pseudomonas simiae WCS417

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 73 to 96 (24 residues), see Phobius details amino acids 105 to 121 (17 residues), see Phobius details amino acids 127 to 150 (24 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 254 to 274 (21 residues), see Phobius details amino acids 294 to 317 (24 residues), see Phobius details amino acids 328 to 346 (19 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 44 to 352 (309 residues), 440.4 bits, see alignment E=2.6e-136 PF02653: BPD_transp_2" amino acids 51 to 341 (291 residues), 154.6 bits, see alignment E=1.5e-49

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 97% identity to pfs:PFLU0586)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U447 at UniProt or InterPro

Protein Sequence (355 amino acids)

>PS417_02825 amino acid ABC transporter permease (Pseudomonas simiae WCS417)
MNQPLMLTAAQKAGPKVTIALGALILIVLLALPLLSLLPPDNAFHISAYTLTLVGKILCY
AIVALALDLVWGYAGMLSLGHGLFFALGGYAMGMYLMRQASGDELPAFMTFLSWTELPWY
WVGTQHFVWAMCLVVLAPGLLALVFGFFAFRSRIKGVYFSIMTQALTFAGMLLFFRNETG
FGGNNGFTNFRSILGFGITEPGTRAVLFVATVALLVASLFIGWRLARSKFGRVLTALRDA
ENRLMFCGYDPRGFKLFVWVLSAVLCGLAGALYVPQVGIINPSEMSPTNSIEAAVWVALG
GRGTLIGPLLGAGVVNGMKSWFTVAFPEYWLFFLGALFIIVTLYLPKGVIGLLKK