Protein Info for GFF5544 in Variovorax sp. SCN45

Annotation: FIG001614: Membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 32 to 49 (18 residues), see Phobius details amino acids 55 to 76 (22 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 207 to 225 (19 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details amino acids 255 to 280 (26 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details PF06166: DUF979" amino acids 7 to 317 (311 residues), 415.8 bits, see alignment E=5.8e-129

Best Hits

KEGG orthology group: None (inferred from 91% identity to vpe:Varpa_0697)

Predicted SEED Role

"FIG001614: Membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>GFF5544 FIG001614: Membrane protein (Variovorax sp. SCN45)
MILSIQHLYILVGLILAITAIMTLTDRQHPKRYTSGLFWALYSLVFLVGDKLPPAWVGVG
AIAMAVIAGMRGVGAGKHREPSPEQYQASVKRLGNKLFMPALAIPLVTVIGTVLMSKVKI
GDAFLLDPKNTTLVSLGVGCVAALALACWLTRETPVQGMRESRRLTDALGWAVVLPQMLG
MLGLVFSDAGVGKAVAHITTSYINMDIRFVAVVVYVLGMALFTIIMGNGFAAFPVMTGGV
GVPVLVGVYHGDPAVMAAIGMFSGYCGTLMTPMAANFNIVPAALLELPDKNAVIKVQIPT
AAALLVVNIFLLYFLMFR