Protein Info for PS417_28345 in Pseudomonas simiae WCS417

Annotation: cardiolipin synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 transmembrane" amino acids 6 to 31 (26 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details TIGR04265: cardiolipin synthase" amino acids 21 to 479 (459 residues), 379.3 bits, see alignment E=1.6e-117 PF13396: PLDc_N" amino acids 21 to 60 (40 residues), 26.7 bits, see alignment 6.7e-10 PF13091: PLDc_2" amino acids 136 to 244 (109 residues), 31.2 bits, see alignment E=2.6e-11 amino acids 320 to 441 (122 residues), 99.1 bits, see alignment E=2.7e-32 PF00614: PLDc" amino acids 393 to 419 (27 residues), 34.7 bits, see alignment (E = 1.9e-12)

Best Hits

Swiss-Prot: 97% identical to CLSA_PSEFS: Cardiolipin synthase A (clsA) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K06131, cardiolipin synthase [EC: 2.7.8.-] (inferred from 97% identity to pfs:PFLU6096)

Predicted SEED Role

"Cardiolipin synthetase (EC 2.7.8.-)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 2.7.8.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.8.-

Use Curated BLAST to search for 2.7.8.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UJY6 at UniProt or InterPro

Protein Sequence (479 amino acids)

>PS417_28345 cardiolipin synthetase (Pseudomonas simiae WCS417)
MDFFGPHLLAYFIATLHFLGTLAAIHAVLTVRTAQGSIAWALSLMFMPYLTLIPYLIFGR
STFDAYIQARRQANQEMHTAIAELNWRPWVEEALAARNSSAYASLRAMPKLGRMPCLANN
EVRLLINGDATFSAIFEAIRNARTAVLFQFFIIHDDDLGRQLHVLLKEKAAEGVAIYVLY
DRIGSHALPHRYVQSLRDAGVNVKAFATRSGWLNRFQVNFRNHRKIVVVDGITGFVGGHN
VGDEYLGKQPPLAPWRDTHVQVIGPVVACLQESFAEDWFWAARELPPLILPDAYPEDGVL
CQLLASGPADPYETCSLFFVEAIHAATERVWITSPYFIPDEAVFSALRLAVLRGVDVRLL
LPSRPDHRIVYAASSLYAIEAVRAGVRVFRYTLGFLHQKVVLVDNEISAIGSANMDNRSF
RLNFEVMLLTVDEAFAKEVEHMLLDDFSLAHEVSQAESRETRRLQQLGMRVARLISPIL