Protein Info for GFF5473 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 818 PF18883: AC_1" amino acids 342 to 450 (109 residues), 93.8 bits, see alignment E=7.3e-31 TIGR01414: outer membrane autotransporter barrel domain" amino acids 353 to 818 (466 residues), 248.1 bits, see alignment E=9.1e-78 PF03797: Autotransporter" amino acids 548 to 794 (247 residues), 161.6 bits, see alignment E=3.2e-51

Best Hits

KEGG orthology group: None (inferred from 53% identity to bpe:BP1344)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (818 amino acids)

>GFF5473 hypothetical protein (Variovorax sp. SCN45)
VVCDGTTGGSTSVTAQPGSTGVGITVNAGATLSTNATQALLVRDGSSITNNGTISISGGS
GGTRGAMISTGNDNTLTNNGTIRTTSGGTVGMLVTLTSSTRTLLTNTGSITTTGGASHGI
STLGPGNTVINSGTIDVSGTAAKGVYLQGGNLVANLLVNTGTIRATGANTSTTNGFASAV
HVNTLSASFFSQVENRAGGVLSSASDYGYRGQNGNDTLINAGFIEGHGGSNNDGAILMGG
GGTGTLILQTGSVIRGAADGGNASSDAFLEGSGTIDNAFRNFQNLTMRGTRWSWQTDASF
SNSIRIESGRFDLPATLASPSIAVLPGATVAGTGTFAGNVTNQGTLLPGPNDGVNFGAFT
VRGNYFGGSGALVQVNTVLAGDNAPSDKLVIDGGAASGGTGLRVVNRGGLGAPTLADGIL
VVQAVNGGTTAAKAFSLTQPVEAGAYDYHLFRGGVAGGNPDNWYLRNSGYAVGGTVVGTP
EEAIEIMGQVPGGAASLDPVHLYRPEVALYSSMPLVVRRLGLAQLGSFHDRQGDQQLLAG
DEGSQASWGRVFGESTRQRLNGDANPQFDGSISGLQLGHDVLIATDAAGGRNRVGVLGGY
TRASGDTSGSAGGLANAATGRLSIEGYSLGAYWTRVASTGWYSDAVLMATRFSTDARSTL
GRGGTSHGNAVTASLEAGYPLALGDGVTLQPQAQLIWQRSSIDSFDDGISAVGFQRDNTV
TGRLGARLEGNFSAGGGTWKPYLKANLWHTFSGSNAIFFGPTDQVVNRRNASALEVGVGL
VGQLNKVMALYGGLTYISAIGNTQQTGVQGQLGLRLRW