Protein Info for PS417_27995 in Pseudomonas simiae WCS417

Annotation: type IV secretion protein Rhs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1464 transmembrane" amino acids 21 to 47 (27 residues), see Phobius details amino acids 52 to 74 (23 residues), see Phobius details amino acids 271 to 291 (21 residues), see Phobius details PF05488: PAAR_motif" amino acids 179 to 225 (47 residues), 35 bits, see alignment (E = 2.7e-12) PF20148: DUF6531" amino acids 303 to 382 (80 residues), 72.8 bits, see alignment 4.6e-24 TIGR01643: YD repeat (two copies)" amino acids 495 to 531 (37 residues), 17.2 bits, see alignment (E = 5.8e-07) amino acids 584 to 624 (41 residues), 27.2 bits, see alignment (E = 3.9e-10) amino acids 657 to 688 (32 residues), 23.9 bits, see alignment (E = 4.4e-09) amino acids 669 to 709 (41 residues), 31.5 bits, see alignment (E = 1.7e-11) amino acids 711 to 751 (41 residues), 23.1 bits, see alignment (E = 8e-09) amino acids 753 to 793 (41 residues), 32.9 bits, see alignment (E = 6.4e-12) amino acids 795 to 824 (30 residues), 17.6 bits, see alignment (E = 4.3e-07) amino acids 827 to 857 (31 residues), 16.3 bits, see alignment (E = 1.1e-06) amino acids 895 to 927 (33 residues), 18.3 bits, see alignment (E = 2.6e-07) amino acids 1150 to 1181 (32 residues), 20.7 bits, see alignment (E = 4.5e-08) PF05593: RHS_repeat" amino acids 495 to 531 (37 residues), 28.9 bits, see alignment (E = 2.3e-10) amino acids 610 to 641 (32 residues), 25.8 bits, see alignment (E = 2.3e-09) amino acids 669 to 705 (37 residues), 33 bits, see alignment (E = 1.3e-11) amino acids 741 to 769 (29 residues), 23.9 bits, see alignment (E = 9e-09) amino acids 775 to 810 (36 residues), 23.1 bits, see alignment (E = 1.6e-08) amino acids 1150 to 1181 (32 residues), 22.4 bits, see alignment (E = 2.6e-08) PF03527: RHS" amino acids 1237 to 1272 (36 residues), 45.7 bits, see alignment (E = 9.6e-16) TIGR03696: RHS repeat-associated core domain" amino acids 1263 to 1342 (80 residues), 89.6 bits, see alignment 1.4e-29

Best Hits

KEGG orthology group: None (inferred from 78% identity to pfs:PFLU6030)

Predicted SEED Role

"Rhs-family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UQU6 at UniProt or InterPro

Protein Sequence (1464 amino acids)

>PS417_27995 type IV secretion protein Rhs (Pseudomonas simiae WCS417)
MSDALWAARMGDALTHTSMMADILGGVLEVAANVAITALATAAVAAAVGVTIATAGIGGC
ILGAVVGIVVGMAMSKTGADKGLSKMCESFANALFPPVVEATIAVGSTDTFVNSIPAARA
AGSIPSHVAPAGTELEQVPPEPDPEPRPEPGFLDMAEGFFSQLWRPTVATPAPGVVPALT
DMVLCARHPPMPPQLLAEGSDKVTINGQPAVRSGDRSMCDATVVSSGLISPNVTIGGGTV
VVQEIRSGKTPGVGLAIEALMMLKGAKGKTLSNLPCMLLAGVTSYAVSQAMGAAANATMG
SPNPVHAATGAKVLGGETELDFVLPGILPIDWQRFYNSRDERRTGMFGAGWSVPYEISVE
ILLHPDGGEELLYTDEQGRRINLGGISLGSAMFSPGEGLSIRRHRNGQLLIESADGIYRL
FESTPANVSLLRLTQLGDRNDHRIHLNYDAAGRLVQLHDNLDLVQVELIRDQGHVSKIER
VYPDQRREVLVSYSYNATGDLTEVRDATGQIQRRFSYDAGRRMVEHQLPAGLRCFYEWAL
VEDVEWRVSHHWTDEGDAYHFEYDLSAGVTRITDGMQRISIRHWNNQHQITKYSDNLGQT
WLFDWNDERQLLGATDPQGGRFEYSYDETGNLISEIDPLGRRDSTMWLEHWALPLVETNP
ANHSWHYQYDQRGNCIAATDPMGHITRYRYDSHGHPVEIIDATGKSKKLRWSPFGQLVEH
IDCSGYSTRFGYDERGFLQFITDALGERTQFSHDARGRLISSQLPDGRTEQYTRDTSGLL
LGYTDPAGHTTLYQHNRRGQVCQRTDAYGRRVKFAYDSYGRLKALINENEESYQFVWDAG
DRLTEQRDLDGSAKRYTYDLLNHMTAMTAVPAHFDNTLVNAAETPSPIVHRMERDAVGRL
IAKMTDDGRTEYVYDSLDQLCAVTFTDLSGDTQVLSFAYAPLGRLLTEQSPMGTLQHHYD
ELGNLTQTQLPDGRWLNRLYYGSGHLHQINLDGEVISDFERDRLHREVLRTQGQLSTRSE
YDRSGRLRSRHCRHSHQPMLTPAAMQQHFEYDPADNLTGKLDQQPTTQQRQLLHYDATGR
ITASQDNLLGQRETFTYDAAANLLDSPHPGAGLVVHNKLMTYQDKRYRYDGFGRMIEKRS
TSRGVQRFAYDAESRLIEVRNENGNVVKMHYDPLGRRIKKTEHGIDGYPLSETRFSWDGL
RLLQEHKYSQTSLYVYENEGYEPLARVDGIGQLQKLRYYHNDLNGLPAQLSEADGHIVWQ
ATYRVWGNTLEEVREPHYIEEQNLRFQGQYLDRETGLHYNTFRFYDPDIGRFTSPDPISL
MGGLNLYLYGFNPFSWVDPLGLEGIELGPGEQLGNPKDINFAQRTINSAFDTPEGKKPIQ
SVVNQVKKGKLKVTDFPPIEVVNVKGQLVARDGNSRLAIAVLGKAKQIKYKVITDPTLLR
DFNTRLRNNGLPNSGTSKVPTCKG