Protein Info for GFF5448 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: NADH-ubiquinone oxidoreductase, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF04321: RmlD_sub_bind" amino acids 22 to 170 (149 residues), 38.2 bits, see alignment E=1.4e-13 PF01370: Epimerase" amino acids 23 to 133 (111 residues), 52.1 bits, see alignment E=9.8e-18 PF13460: NAD_binding_10" amino acids 27 to 168 (142 residues), 52.7 bits, see alignment E=7.7e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>GFF5448 NADH-ubiquinone oxidoreductase, putative (Hydrogenophaga sp. GW460-11-11-14-LB1)
MFLEQGRTTSADPAVAPGAPPRVLVLGANGFIGRHVVRALLAQGMAVVGVRRAAPAEGAG
EPARLTWKHLQLHTLREPGAWHEHLQGVDVVVNCVGILRQRVGERYEDVHHLMPRALAAA
CAASGVRLIHTSALGLHEGAKSRFLSSKLRGEQAIQASGADHCIVRPSLIDGLGGFGASW
LRMLASWPVHFVPRGATGRIAALQATDLGEAFAVLARLPTLAHQREANLGGERLFAYRHY
LQVLRGVEHAEQPVKPALQVLLPDWVSRAGAHLCDVFRFSPFSYGHWILLQRDNMPVPNA
LPRLLGRAPLPVTHRRTALRDDFRLS