Protein Info for GFF5444 in Variovorax sp. SCN45

Annotation: FIG005080: Possible exported protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1405 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details PF13116: YhdP" amino acids 15 to 1369 (1355 residues), 820.5 bits, see alignment E=3.1e-250 TIGR02099: TIGR02099 family protein" amino acids 463 to 1375 (913 residues), 582.4 bits, see alignment E=9.6e-179

Best Hits

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1405 amino acids)

>GFF5444 FIG005080: Possible exported protein (Variovorax sp. SCN45)
MNDTASTPSRLLKITAVTARWLLGLLIAAWLLLALSVVVLHAWIVPRIGDFRGALEAQAS
KAIGVPVRIGSITARSEGLFPAFELRDVVLQDSDKREALRLVRVVASVSPRSLWRLNFEQ
LYIEGPQLDVRRDTQGKLHVAGLHMDTETSGETRGADWFFAQRELVIEGGTVRWTDEQRQ
AEPLLLTDVRFVARNTGLRHGVRLDATPPAGWGERFTLRGQFRQPLLSMRSGHWQTWDGQ
LYADLPYIDVTRLGQYVSLDARIREGNGALRVWADVDDGQIVGGAADLGLDKVDVSLDKG
LQPLVLRGVTGRLSGQLTADTLEFATTALQFDTSDGLRWPGGNLWLQHTPAKGRTPEHGA
LRADRLDLAALALIADRLPLGEASHRMLDAYAPRGLVEHIDLNWQGTLGAPDRYQAKGRV
SGLRVASQPGTAPQPAPATPPAPAATTTTANAGASAAPPKVHAGTPGLSGATVDFDATHA
GGTATLAIAQGTLEFPGVFEEPVIPIDRLSAQLQWKLDNGNAQLQVSKLRFANVDAEGDA
EASWRTSNPATSSSKGHYPGVLDLQGKLTRADGTRVFRYLPLDIPQHTRDYVRDAVTKGT
ASSVDFRVRGDLHDMPFLDPKLGEFRIVAKVADVDYAYSPPHVPATPARNGKPPAVWPPL
TALSGELVFERDSMLVRNARGRLAGTAGVEVTKAEAHIPELSHHAPQLRVDAQAKGPLAE
VLRVGAPLAGLETGGVGEIMQRARATGSADYKLHLDMPLAAMDNTKVQASVTLADNELQI
VPEAPSFSQTRGTLNFTETGFTLAGVQARLLGGDIRIEGRGRFSGPNREVALKAQGTATA
DGLRGAREVDWLARLAKSATGSTPFAATFSTRDGTPEFSLTSSLQGLALQLPPPLMKTAE
EQMPLRVEKKVLAREARQGAANLGAATQDQLSFDLARVGSVQYVRDLAGGEARVSRGSIG
IGLAPGETASLPDKGVFANINVGKLDMGALQSLAGDAIGASTGTEAAERPDDTSLLAYLP
TRIAVRAQQLGIAGRTLHNVVLGGTRDGTLWRANIDATELSGYAEYSHTQAGRLYARLAR
LKIAPSEATQVETLLDEQPGTLPALDIVVDDFELFGKRLGRAEIDAVNRGGAGREWALNK
LAFNTPDASFSAKGSWAAIPGAAAGQRRTAMSFKLEIVDAGDLLTRFGMPGVLRRGRGRL
EGDVNWRGSPFSLDYPSLGGQLQVDVEQGQFLKADPGLAKLLGVLSLQALPRRLTLDFRD
VFSQGFAFDFIRGDAKINKGIASTNNLQMKGVNAAALMDGSADIVRETQDLRVVVVPEIN
AGTAALVATAINPAVGLGTFLAQWVLSKPLSAAATQEFHIEGTWADPKIAKVPRSLQLLP
QGIPHMPGLPSTPTADEGKKTETTQ