Protein Info for PS417_27860 in Pseudomonas simiae WCS417

Annotation: energy transducer TonB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details PF13103: TonB_2" amino acids 152 to 228 (77 residues), 40.2 bits, see alignment E=3.1e-14 PF03544: TonB_C" amino acids 165 to 243 (79 residues), 51 bits, see alignment E=1.7e-17 TIGR01352: TonB family C-terminal domain" amino acids 166 to 244 (79 residues), 64.6 bits, see alignment E=4e-22

Best Hits

Swiss-Prot: 59% identical to TONB_PSEPU: Protein TonB (tonB) from Pseudomonas putida

KEGG orthology group: K03832, periplasmic protein TonB (inferred from 99% identity to pfs:PFLU6001)

Predicted SEED Role

"Ferric siderophore transport system, periplasmic binding protein TonB" in subsystem Campylobacter Iron Metabolism or Hemin transport system or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UED4 at UniProt or InterPro

Protein Sequence (249 amino acids)

>PS417_27860 energy transducer TonB (Pseudomonas simiae WCS417)
MITTRHKLTRYGTSLAVVLGVHAVAIAIALHWSAPRTVQLPPAAMVIDLAPMPAPPPPAP
PKVVTPPQPPAPVEELPLPKLAEAPKPTIQVPKPVKPKPKPQPPKPVEKKIEPPKEKPSE
DPPSDAPPTQAPAEKSAQPVPGPSPQQIAAKASWEGTLLAHLQKYKKYPPGAQARGKEGL
NRLKFVVDADGNVLSYELVGRSGNADLDRATLDMIRRAQPLPKPPADMLRGGSIEIVAPF
VYNIEKRRR