Protein Info for GFF5435 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: ABC-type tungstate transport system, ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF00005: ABC_tran" amino acids 32 to 164 (133 residues), 104.6 bits, see alignment E=7e-34 PF13304: AAA_21" amino acids 119 to 207 (89 residues), 27.3 bits, see alignment E=3.4e-10

Best Hits

KEGG orthology group: K06857, putative tungstate transport system ATP-binding protein (inferred from 63% identity to bpt:Bpet4654)

Predicted SEED Role

"ABC-type tungstate transport system, ATP-binding protein" in subsystem ABC transporter tungstate (TC 3.A.1.6.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>GFF5435 ABC-type tungstate transport system, ATP-binding protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
VTAQRAVVPTPCFELRGVQVHLGPAARLQALTDVFLRIEEGERVALVGANGSGKSTLLRT
LHGLQRPSAGELHTPARQRAAMLFQRPHMLRMSARRNIQLGLWLHGVPARQTRALALQAL
ERVEMGHLAERNARALSGGQQQRLALARAWALRPAVWLLDEPTASLDPHAKREVEALIAE
FTAAGQRDVVGQPTGRPTTLVFSSHNLGQVKRLASRVVYLEQGRLLADLPVADFFNHDLL
RSLCPQAHLFVQGESL