Protein Info for GFF5408 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Bll5686 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 transmembrane" amino acids 36 to 57 (22 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (245 amino acids)

>GFF5408 Bll5686 protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MNTATPHPHMLGAAVVRHLPGLRHSPFALERAEHGLFLLWLAFMGLLGFGALLLWQAGAW
HRLVHADPTGLTVVIVLLFTGGSLWAGRRAWVLGEQRLRLDTAREDPLDTWSAEYRAGCA
RPGADPSVWLQVLGERAHGPHEMAWWLNGIQLKLGLLGKVIGFSILALQLGEVQSFDASQ
STQLLRNLTGGLGIALLTTVTGLTGNILLGLQLMRLDRFSDALIADTLAASPRPEAHDGD
RPIGP