Protein Info for GFF538 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 923 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 341 to 360 (20 residues), see Phobius details amino acids 371 to 392 (22 residues), see Phobius details amino acids 401 to 420 (20 residues), see Phobius details amino acids 707 to 737 (31 residues), see Phobius details amino acids 744 to 765 (22 residues), see Phobius details amino acids 776 to 795 (20 residues), see Phobius details amino acids 825 to 845 (21 residues), see Phobius details amino acids 865 to 888 (24 residues), see Phobius details PF00332: Glyco_hydro_17" amino acids 251 to 331 (81 residues), 33.5 bits, see alignment E=9e-12 PF13641: Glyco_tranf_2_3" amino acids 450 to 679 (230 residues), 107.6 bits, see alignment E=2.5e-34 PF00535: Glycos_transf_2" amino acids 453 to 622 (170 residues), 76.6 bits, see alignment E=5.9e-25 PF13506: Glyco_transf_21" amino acids 536 to 677 (142 residues), 44.2 bits, see alignment E=3.7e-15 PF13632: Glyco_trans_2_3" amino acids 539 to 752 (214 residues), 90.8 bits, see alignment E=2.8e-29

Best Hits

KEGG orthology group: None (inferred from 84% identity to xau:Xaut_4423)

Predicted SEED Role

"beta-(1-3)-glucosyl transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (923 amino acids)

>GFF538 hypothetical protein (Xanthobacter sp. DMC5)
MRPGLAAAAAVIAVVTSFHAAMWLSMRPEASAPNITDRFQSLSFAPFARNMSPEGDAPTT
EAQVRSDMAVVAPYSRGVRTYSSTNGKELIAPVAAEQGLRVTAGAWLNKEVDEKNGEPIK
VKDKSGKFVLNPQTGEPLTAKEENDRELDSVVKVARQNRNVNAVIVGNETLLRGDMTKTE
LAAVIRKVKRQVNVPVSTGEIWNTWLEPGAPELVASVDFILAHILPYWEEVPADQVVDYA
INAYNRLRAAYPGKRIVIGEFGWPSHGYNRGASVPDPMEQAKIIRNFVARADALGIEYNI
IEAFDLPKKQNEGSVGQYWGVFDADRTLKFPLTGPIFEKTYNQTAILALLLGVLFTLPLL
RMRDLTLTQGLVLAASANGVAAWLALVVDYWLNHYVSGGDYLTLALSVVMLVPLVFVLLY
RIEELAAVAFGSGPKRLVEEQKHAAPTRFPKVSIHVPAYREPPEMLIQTIDALARLEYPN
YEAIIIVNNTPDPAMVEPVREHCAKLGEHIKFINAEKVAGFKAGALRIALDATAPDAEII
GVIDADYVVTPDWLKDLVPAFDDPTVGLVQAPQDHRDGHRSPLHEAMNAEYAGFFDIGMV
QRNEDDAIVVHGTMCLIRRAAMVEAGNWSSDTICEDTDLGLSIAENGWKTHYTRKRYGYG
LLPDSFEAFKKQRHRWAYGGFQIIKKHWRRFLPNNSRLTTAQKRHFVLGWISWLGSESVG
AFMAIASLMFVPFVAYFSISVPAHVLTLPILITFLVYVLHFISLYRLRVETTPLRMLGAA
VAASAVQFTVAKAVVDGFRYKDLAFARTAKGNNWLAGAARSFPALPEAIIGGLLIAAGAY
MLVANNLPGSSIVKTSNDWRHIREINLYGIALLVQSLPFVAAAMIGAFEPSRLNDFATWR
VIRAKLAAVPRRLGLNAPPAVAD