Protein Info for GFF5373 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Carbon-monoxide dehydrogenase form II, large subunit (EC 1.2.99.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 793 PF01315: Ald_Xan_dh_C" amino acids 26 to 145 (120 residues), 100.1 bits, see alignment E=1.4e-32 PF02738: MoCoBD_1" amino acids 162 to 411 (250 residues), 247.9 bits, see alignment E=1.2e-77 PF20256: MoCoBD_2" amino acids 439 to 726 (288 residues), 317.9 bits, see alignment E=1.1e-98

Best Hits

KEGG orthology group: None (inferred from 82% identity to pol:Bpro_0577)

Predicted SEED Role

"Carbon-monoxide dehydrogenase form II, large subunit (EC 1.2.99.2)" in subsystem CO Dehydrogenase (EC 1.2.99.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.2.99.2

Use Curated BLAST to search for 1.2.99.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (793 amino acids)

>GFF5373 Carbon-monoxide dehydrogenase form II, large subunit (EC 1.2.99.2) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MGASDFSKLPHIGESLKRKEDYRFLTGAGQYTDDIVLPNMHHAVFVRSPHAHANIRKIDK
AAALKAPGVIGVLDGNDVAGDKIAGLPCGWLITDTAGQPMKEPPHPILAFGKVRYVGDHV
AMVVADTLENAKNAAELVDVDYEPLAAVVDVRDAMKPGAPALHEAAADNHCYKWAIGDKG
QVDAAFNGAAHVTKIDLVNNRLAPNPMEPRAAIASYNRAGDDYTLYVANQNPHVERLLMT
AFVLGLPEHKVRVIAPDVGGGFGAKIFLYAEDVCLTWASKKLNCAIKWTCDRSEAFLSDA
HGRDHVTHAEMALDKDGHFLAFRVHTDANLGAYLSTFSTAVPTILYATLLAGQYKTPQVY
VEVDAWFTNTSPVDAYRGAGRPEATYLLERIVSRCAWETGLSQDEIRRRNFITEFPYQTP
VALQYDTGDFPACMAQANELAEVASFEQRKAASKAKGLLRGVGYSSYIEACGLAPSNVAG
ALGARAGLFECGEVRVHPTGSVTVFTGSHSHGQGHETTFAQVVASRLGLDPSQVDIVHGD
TGRVPFGMGTYGSRSISVGGAAIMRALDKIEAKAKKIAAHLMETGDADVDFANGEFTVKG
TDKKVTFGQVALTAYVPHNYPLDKLEPGLNETAFYDPTNFTFPAGTHICEVEIDPNTGVV
RIDRFTAVDDFGTIINPMIVEGQVHGGLVQGIGQALLEHCVYDRDTGQLVTGSFMDYAMP
RADDVPDFKLGHVVTPCTTNPLGTKGCGEAGAIGSPPAVINAVLDALAPLGVKDIDMPAS
PSRVWEAIQRAKA