Protein Info for GFF537 in Variovorax sp. SCN45

Annotation: FIG00453455: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 PF00891: Methyltransf_2" amino acids 155 to 311 (157 residues), 28 bits, see alignment E=3.4e-10 PF13847: Methyltransf_31" amino acids 155 to 307 (153 residues), 32.4 bits, see alignment E=1.9e-11 PF13649: Methyltransf_25" amino acids 157 to 250 (94 residues), 29.5 bits, see alignment E=2.6e-10 PF08242: Methyltransf_12" amino acids 158 to 256 (99 residues), 33.3 bits, see alignment E=1.6e-11

Best Hits

KEGG orthology group: None (inferred from 60% identity to bml:BMA10229_0221)

Predicted SEED Role

"FIG00453455: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>GFF537 FIG00453455: hypothetical protein (Variovorax sp. SCN45)
MQNVDRGITGSSLAGSAILLEIGAEYGIIETLQNSPVLDAATVSRSSGIKEPVIAAYLDS
LSKAGIIEELDKKPTATYRTSNHFDELINEVGYLSWALRACAPLINNAKEFSENNEEAQL
KYPRSGGLVARTSKWMGEKSFYPQPENAIVAMAPKKIVDLGSGSGGFLIRMLRKIPGSTG
IGIDLSPSATEQAVHAASEAGMSDRLQFVTAPIQILVTDPSLIRDADIIHAGFVMHDLLP
AEEETLDALLRACCANAIKGTLIIVDAIPVAQSNWEKPFAAAFNHLHNHFMSRKLLSEKE
WTEKLTRAGFSNVRIEILDHPGGRMLMASR