Protein Info for GFF535 in Variovorax sp. SCN45

Annotation: Transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 PF02311: AraC_binding" amino acids 19 to 150 (132 residues), 63.9 bits, see alignment E=2e-21 PF12833: HTH_18" amino acids 198 to 275 (78 residues), 69.5 bits, see alignment E=3.8e-23 PF00165: HTH_AraC" amino acids 243 to 274 (32 residues), 28.3 bits, see alignment 2.2e-10

Best Hits

KEGG orthology group: None (inferred from 65% identity to bma:BMAA0954)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (279 amino acids)

>GFF535 Transcriptional regulator, AraC family (Variovorax sp. SCN45)
LARLDPRNTSRYWHVPDLPGMDMLHADFTTHEYAPHVHHSFVIAVTEVGGAEFKSRGRTD
IAHQQALLVFNPSEPHSGRMGGSSRWRYRAFYLAEPGIRHLLTTLGIDQTRYFMSNILGD
RELIASFLELHRAFDGHREQWDALRQQELFVHSFGSLFQSHGQAGQRVLGVPADAQVLAP
VLELLHDAFAERLTLEQMAAAADLTPFQLIGAFNRTIGLTPHTYLTQLRLRAAIAQLAAG
RPLIEAAIASGFYDQSALTKHFKRTFGMTPLQYVRAGMC