Protein Info for GFF5312 in Variovorax sp. SCN45

Annotation: Cytochrome c-type biogenesis protein CcsA/ResC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 45 to 64 (20 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 249 to 268 (20 residues), see Phobius details amino acids 280 to 297 (18 residues), see Phobius details amino acids 309 to 326 (18 residues), see Phobius details amino acids 347 to 367 (21 residues), see Phobius details amino acids 381 to 399 (19 residues), see Phobius details amino acids 407 to 429 (23 residues), see Phobius details TIGR03144: cytochrome c-type biogenesis protein CcsB" amino acids 143 to 436 (294 residues), 259 bits, see alignment E=2.6e-81 PF01578: Cytochrom_C_asm" amino acids 173 to 433 (261 residues), 168.8 bits, see alignment E=7e-54

Best Hits

KEGG orthology group: None (inferred from 98% identity to vpe:Varpa_1219)

Predicted SEED Role

"Cytochrome c-type biogenesis protein CcsA/ResC" in subsystem Biogenesis of c-type cytochromes or Experimental tye

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>GFF5312 Cytochrome c-type biogenesis protein CcsA/ResC (Variovorax sp. SCN45)
MNTTTLTLNESWLSRRNLFDWVFAALVLAGGLFAFTRYAGSMDYYEKPILAAAVISMIAI
GWFWRPLRVLAIVVAAASLLAISSYQGDLARADTVFWLKYFLSSQSAILWMSVLFFMSTL
FYWLGFFGGKQSDTFDMIGSRLAWAAVTMALIGTMVRWYESHQLGPDIGHIPVSNLYEVF
VLFCWLTAAFYLYFEERYNTRALGAFVMLVVSAAVGFLLWYTIVREAHEIQPLVPALQSW
WMKLHVPANFIGYGTFALAAMVAFAYLIKEQADEKRWYKLTPIWLLGVALCFVPVAFRQR
VQEAGGSYWVVYAGISALIAAGILLGRKRIAARLPANEVLDDVMYKSITVGFAFFTIATV
LGALWAADAWGGYWSWDPKETWALIVWLNYAAWLHMRLVKGLRGTVAAWWALGGLAVTTF
AFLGVNMFLSGLHSYGTL