Protein Info for GFF531 in Methylophilus sp. DMC18

Annotation: Flagellin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 PF00669: Flagellin_N" amino acids 5 to 141 (137 residues), 153.4 bits, see alignment E=4.1e-49 PF00700: Flagellin_C" amino acids 179 to 264 (86 residues), 91.4 bits, see alignment E=3.7e-30

Best Hits

KEGG orthology group: K02406, flagellin (inferred from 72% identity to mmb:Mmol_0919)

Predicted SEED Role

"Flagellin protein FlaB" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>GFF531 Flagellin (Methylophilus sp. DMC18)
MASVINTNIASLNAQRNLNASQTGLNQSIQRLSSGLRINSAKDDAAGMAIATRMDSQIRG
SDVAIRNSNDAISYLQVTEGGLSKATDALQRMRELAVQAANGSYGSGDRANLNTEFTQLT
SELSRLSTSTQFNGLNVFGGSGYTFQIGSGSADTLQVSAVTAASISGNVSTVSDATAAIT
AIDAQLDAVNTSRASLGAYQNRFEAVVSSLQVNVENISAAKSRITDADFASETAKMTRNQ
ILQQAGTAMLAQANQLPNSVMSLLRG