Protein Info for GFF5304 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details PF08521: 2CSK_N" amino acids 21 to 163 (143 residues), 101.6 bits, see alignment E=6.1e-33 PF00512: HisKA" amino acids 242 to 315 (74 residues), 33.2 bits, see alignment E=6.7e-12 PF02518: HATPase_c" amino acids 367 to 470 (104 residues), 87.2 bits, see alignment E=1.6e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (478 amino acids)

>GFF5304 no description (Variovorax sp. SCN45)
VPRRASLRLRLALWLLLPMSVFVAICGYLNWRNAAEVADYVQDHDLLSSAKVLSDRLIWE
DEDVKASVPPSALSLFVSPERDRVFLSVTGANGEVLAGSADFPLPAVRKPEGIDRAQWYD
TRFAGVPLRAVVTTRAMYEAGGARDITIAVGKTEGSRDHMLRTLWWPSMEYLLIALALSI
ALVVVALTLELRPIVRLSQQLAQRDPLHLDLVVDPGALHSELRPVADTINRFVGQLKAHS
EAQRRFIADAAHQLRTPLAMQASQIEFARYTRQHRGEWDTRRADMDAMWQEMQTSNRRLV
DVTNKLLLLAQAEHGDAHTRLEPVDLAAVALRCVEQLAALADRRGIDLGLESQAAPGEAV
VQAQPALLDALATNLLDNALRYTQEGGRVTVGVRNVEGTVELTVEDNGPGIPAEARERVF
ERFYRVSQDTEGTGLGLAIVREIARAFDANVDLAANPREARGLLVTVRFPSVVAAAAA