Protein Info for GFF5289 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 34 to 57 (24 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details PF03239: FTR1" amino acids 1 to 199 (199 residues), 35.8 bits, see alignment E=2.9e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (251 amino acids)

>GFF5289 hypothetical protein (Variovorax sp. SCN45)
MFDAFAITLREVAELILIVGSLAAYLRQAGRGDLIACIGWGLAVGLVPASALAVVLIDAE
FGSGVEAALATAMATGVLLMAVGMGASAGKIRGRVQLFFDAWLERPAAPAAVIVFVALAS
FRESLEIAVFARSIHAREGTADALAGVIFGAAAASLLLPAWRWLRVRSGMLMVFRASALL
LSLLSIQLLLHGVSELLRAPMFTSSGFDLVAIAEPFLEGGSRYGWVCAVLMLLPVSLLAR
GWWLRTGTADR