Protein Info for GFF5265 in Sphingobium sp. HT1-2

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 transmembrane" amino acids 44 to 64 (21 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 118 to 136 (19 residues), see Phobius details amino acids 142 to 163 (22 residues), see Phobius details amino acids 175 to 198 (24 residues), see Phobius details amino acids 210 to 228 (19 residues), see Phobius details PF07690: MFS_1" amino acids 45 to 230 (186 residues), 36.1 bits, see alignment E=1.9e-13

Best Hits

Predicted SEED Role

"Sugar transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>GFF5265 Uncharacterized MFS-type transporter (Sphingobium sp. HT1-2)
MRVPELPLDPQDRARIDGEALTAKAAARDFMAALRDMPRPMRQLAVAMLFQWFAMFAYWQ
YIAFALGRSLFGTADASSAAFRQAVLVTGQAGALYNFVAFIAAFAMMPIVRRVGARPVHA
GAMLLVGAAMLWLSLVTSRIGLVPAMIGVGVGWASLMGNPYVMLARAIPPARTGVYMGIF
NMFIVIPMMIETLVMPLIYRPLLGGDPRNVLLLSGAMMLVAAAATLRMTEERGVAA