Protein Info for PS417_02675 in Pseudomonas simiae WCS417

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00005: ABC_tran
  • amino acids 21 to 165 (145 residues), 118.3 bits, E=4e-38

Best Hits

Swiss-Prot: 60% identical to LIVF_SALTI: High-affinity branched-chain amino acid transport ATP-binding protein LivF (livF) from Salmonella typhi

KEGG orthology group: K01996, branched-chain amino acid transport system ATP-binding protein (inferred from 99% identity to pfs:PFLU0556)

MetaCyc: 60% identical to branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF (Escherichia coli K-12 substr. MG1655)
ABC-15-RXN [EC: 7.4.2.2]; 7.4.2.2 [EC: 7.4.2.2]; 7.4.2.2 [EC: 7.4.2.2]; 7.4.2.2 [EC: 7.4.2.2]

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.2

Sequence Analysis Tools

See A0A1N7U423 at UniProt or InterPro

Protein Sequence (238 amino acids)

>PS417_02675 ABC transporter ATP-binding protein (Pseudomonas simiae WCS417)
MSAPILEMKDLDVYYGPIQALKKVSLHINEGETVSLIGSNGAGKSTLLMSIFGQPRAESG
QILYNGVDITHKSSHYIASNGIAQSPEGRRVFPDMTVEENLLMGTIPIGDKFAQEDMQRM
FELFPRLKERRNQRAMTMSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPIVVKQIFSTL
RELASTGMTIFLVEQNANHALRLSDRAYVMVNGEIRLTGTGKELLVNEEVRNAYLGGH