Protein Info for PS417_26820 in Pseudomonas simiae WCS417

Annotation: peptidase M16

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 signal peptide" amino acids 7 to 8 (2 residues), see Phobius details transmembrane" amino acids 9 to 27 (19 residues), see Phobius details PF05193: Peptidase_M16_C" amino acids 230 to 406 (177 residues), 116.9 bits, see alignment E=4.8e-38

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU5783)

Predicted SEED Role

"FIG015287: Zinc protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UJ38 at UniProt or InterPro

Protein Sequence (496 amino acids)

>PS417_26820 peptidase M16 (Pseudomonas simiae WCS417)
MSDRKSSRLIFPGLIVVTLIAASAVYFLRPSDSVASPALEKAQSSNTLQSLAELDDKAPT
NRKLDVQTWTTAEGAKVLFVEAHELPMFDVRILFAAGSSQDGNVPGLALMTNAMLNEGVP
GKDVSQIARDFEGLGADFGNGAYRDMALVSLRSLSASDKRDAALTLFDQVIGKPTFPADS
LARIKNQILAGFEYQKQNPGKLASLELFKRLYGDHPYAHPSEGTPQSVPKITLAQLQAFH
AKAYAAGNAVIAVVGDLTRAEAEAMTGKISASLPKGPALPKIAQPTDPKPGLNRIEFPSK
QTHLLFAQLGIDRADPDYAALSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFSPMQV
RGPFMINLQTRAEMSGGTLRLVEDVVADYLKTGPTQKELDDAKRELAGSFPLSTASNADI
AGQLGAMGFYNLPLTYLEDFMKQSQALTVEQVKAAMNKHLSADKMVIVTAGPTIAQKPLP
PPTDKIAEQPLGVPEH