Protein Info for GFF5224 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 PF00231: ATP-synt" amino acids 5 to 277 (273 residues), 118.8 bits, see alignment E=2e-38

Best Hits

Predicted SEED Role

"ATP synthase gamma chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (282 amino acids)

>GFF5224 hypothetical protein (Sphingobium sp. HT1-2)
MSDRLAEIGQRIETVRQLGAVVNAMQGIAAQRAHQARALLPAVRRYAETARTAIGQARRL
DEPLARFPARAVGGARGGLILFGAEQGFAGAFPEQLLDGAAADMQDRHILLIGARTATLA
AERGLRIAWSASMPSKADALPALATSIIDALYDYLDETGAVPITMAYPVWSSGKGVSIVR
ASLLPLDLDTFPASTADLPPLVNINAADLIGDLTVEYVFAQICAAAVETFVAENEARLRT
MATARSHIDRKGEALRLEERLTRQDQITSEVVELSGGRHRRE