Protein Info for GFF5221 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 38 to 57 (20 residues), see Phobius details PF01882: DUF58" amino acids 205 to 382 (178 residues), 98 bits, see alignment E=4.8e-32 PF13519: VWA_2" amino acids 241 to 344 (104 residues), 30 bits, see alignment E=7.1e-11

Best Hits

KEGG orthology group: None (inferred from 79% identity to pba:PSEBR_a4474)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>GFF5221 hypothetical protein (Pseudomonas sp. DMC3)
VKPSRLLLIWLALLLGVSIVLGAFQALGRELPSSLISINWGLLLALLALAVIDAVRLRRL
PSPRIKRQMPGSLALGRWGEVKLEVAHEFAEPLNINFFDHVPDGLAFEYLPTVVELQPGH
VSQLTYRLRPLERGHFCFEQCEVNLPSPLGLWSGKRLLSVRDETRVYPDFARLYGGELRA
VDNWLSQLGIRQRQRRGQGQEFHQLREFREGDSLRQIDWKATARQRTPIAREYEDERDQQ
IIFLLDCGRQMRSHDGELSHFDHALNACLLLSYVALRQGDAVGMSTFAGDEPRHVAPVKG
SGQLNVLLNAVYDLGSTQLPADYQAAANQLLARQKRRALVVLVTNLRDDDDQVLGAVRRL
SAQHRVLVASLREEALDRLRQTPVQTLPEALAYCGTIDFLNDRSQLHERLTAHGVAVMDV
RPAELGAGLVTSYMSWKKTAAI