Protein Info for GFF522 in Variovorax sp. SCN45

Annotation: RND efflux system, inner membrane transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1038 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 333 to 351 (19 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 384 to 408 (25 residues), see Phobius details amino acids 429 to 450 (22 residues), see Phobius details amino acids 461 to 479 (19 residues), see Phobius details amino acids 519 to 537 (19 residues), see Phobius details amino acids 842 to 865 (24 residues), see Phobius details amino acids 872 to 892 (21 residues), see Phobius details amino acids 901 to 924 (24 residues), see Phobius details amino acids 946 to 966 (21 residues), see Phobius details amino acids 978 to 1003 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1003 (999 residues), 743.1 bits, see alignment E=2.3e-227

Best Hits

KEGG orthology group: None (inferred from 94% identity to vap:Vapar_2410)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1038 amino acids)

>GFF522 RND efflux system, inner membrane transporter (Variovorax sp. SCN45)
MNVSAWSIRNPIPAVMLFVLLTFGGLLSFNAMKVQNFPDIDLPTVTVSASLPGAAPSQLE
TDVARKLENSIATVQGLKHITTKVQDGAATLIVEFRLEKPVQEAVDDVRSAVQRVRADLP
ADVRDPVVTKLDLAGQPVLAFTIASSQMDNEALSWYVDNDVTKRLLALPGVGAVNRVGGA
TRQVHVDLDPVKLQALGASAGDISRQLRQVQTESAGGRFDLGGSEQPVRTMATVKSADQL
ADMQIVLTDGRRIRLDQVARISDTIAEPRAAALLNGKPVVGFEVARSRGASEVEVGHAVQ
KALADMRAQRPDIELTEAFNFVDPVEEEYNGSLHLLYEGAILAVVVVWLFLRDWRATFVS
AVALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILVDDAIVEVENIVRHLRMGKTPYQ
AAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAVFASLVVARVLT
PMMAAYMLKPVVTAETEPGWLRWYMRAVEWSTHNRFKTMVLATLFFFGSLAMIPLLKTGF
IPPDDNSQTQVYLSLAPGSTLAQTTAAAEETRRRVMQIPHVKSVYTTVAGGSAGGDPFAS
FGTPETRKATLTIKLDPRGDRPRKQVIENQIRSALETLPGVRSTVGLGGSGEKYILALTG
EDPVALASAASAVEKDLRTIPGLGNITSTASLVRPEIAVRPDFARAADLGVTSSAIAETL
RVATLGDYDQSLAKLNLAQRQVPIVVKLEDSARQDIDLLGRLSVPGTRGPVMLNQVASLS
MEGGPAVIDRYDRSRNVNFEIELSGVGLGDAKAAVQKLPSIQKLPPGVRIAEVGDAEVMT
ELFASFGLAMLTGVLCIYIVLVLLFKDFLHPVTILCALPLALGGAFVGLLIGQKALSMPS
LIGLIMLMGIATKNSILLVEYAIVARRDHGMSRWDALRDACHKRARPIIMTTLAMGAGML
PIAVGFGSADSSFRSPMAMAVIGGLITSTVLSLLVVPAVFTYVDDIEHWIRRTVRKLRGQ
PADPHIDDDLVETPAAGR