Protein Info for PS417_26650 in Pseudomonas simiae WCS417

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1934 PF01627: Hpt" amino acids 10 to 98 (89 residues), 32.6 bits, see alignment 1.5e-11 amino acids 619 to 704 (86 residues), 48.5 bits, see alignment (E = 1.6e-16) amino acids 750 to 833 (84 residues), 43.7 bits, see alignment (E = 5.4e-15) amino acids 1044 to 1114 (71 residues), 44.7 bits, see alignment (E = 2.6e-15) amino acids 1182 to 1280 (99 residues), 57.9 bits, see alignment 1.9e-19 PF02518: HATPase_c" amino acids 1513 to 1649 (137 residues), 56.2 bits, see alignment 8.7e-19 PF01584: CheW" amino acids 1655 to 1787 (133 residues), 71.3 bits, see alignment 1.3e-23 PF00072: Response_reg" amino acids 1815 to 1926 (112 residues), 97.7 bits, see alignment 9.5e-32

Best Hits

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U838 at UniProt or InterPro

Protein Sequence (1934 amino acids)

>PS417_26650 histidine kinase (Pseudomonas simiae WCS417)
MVDRHDYVALEWVKGDIAETLKQARSALDAYVETSDGDAISECLAAVHQVHGALQMVEFY
GAALLAEEIEALALALQAAGVSQRDESIRLLQQALNQLPLYLDRVHSARRDLPLVVLPLL
NDLRSARGESLLSETSLFSPQLLTIAPLPDEALAQRAVPDLKEQLRQWHQLLQQALAGLL
REDHGPSNLEDMARVFARLETLCQGAPLLPLWQVTSALVEGMLTGVIANSPALRSLLKAS
DKQLKRLLAQGIGGINQPAPDELLKSLLFYVAKVTRPTPRMQSLKERYGLDEALPDSALV
DAERARLAGPDRNAMGSVLGALCEELVRVKERLDLFVRSDRQHTSDLDALLAPLRQIADT
LAVLGFGQPRKVIIDQLAVVLSLVQGQREPNDAVLVDVAGALLYVEATLAGMVGTVEPES
REENRLPTTDLTQIHQLVIRESCQCLKQAKELVIDCIEADWDRQRLESLPELLSQVRGAL
AMIPLPRAASLMRGCTDYVDEQLMGNDAPPSEGQLAHFADVISSLEYYLERMLQDPDAAG
ERVLELATHGLAALGYLPAEKPWRQALVAPDGARAVEVTPSQSQFDALASPTSRLNPPAL
QRPGSLLPPPADEEPIDDELREVFLEETDEVLEVLHRNLPNSADKIAQGEMRRAFHTLKG
SGRMVRALVLAELAWAVENLLNRVLERSVTLGPDVQQVLDEAVALLPELIADFAIDDQRQ
RDEVDALAARAHALASGMPVPAAEPHDPMLLEIFRNEAQSHLDSLNHFLHQAAEHVPLQV
SDELQRALHTLKGSAYMAGVLPIAELARPLDHLTREYKAHRLPLDLDEVELLLEAEGLFQ
RGLRDLDSDPLAPIKGAEDLINRTQSLLDHQLEALLDVRIKRDPQLIANFLAQGMDILLD
AENLLRRWQQHPGERQELTALLDELTTLGEGAHVADLHAIDALCEALLDLYGAVEESSLA
VSERFFHEAEQAHEALISMLDQLAAGQEISPAPARVEALRELLDEALDPSATGLIKSDGS
RVLSVSELGAATQQLGHETERDDEIVEIFLEEAVDILDSAGQSLKRWLLEPDNAAPLSSL
QRDLHTLKGGARMAEIEAIGDLAHELECLYEGLVDRRYSYTAELSHVLMASHERLALQLE
ELHHHQPLSDSAELIARVRALRQGSAPAAPAAAPPASGADPELLDIFLEEAADILDSSSA
ALSRWQAEPGNRQEVETLLRDLHTLKGGARMVEIAPIGDLAHELEFLYEGLSAGLLAPSP
ELFALLQGCHDRLAQMIDAVADGLPVGSVDKLIERIKTLVHPSDEPVTPVALPAGKAEAV
VDPMADMVKISAELLDDLVNLAGETSIFRGRIEQQVNDARIALTEVETTIERMRDQLRRL
DTETQGRILSRQQAEAERLGYEDFDPLEMDRHSQLQQLSRALSESASDLLDLKDTLERRN
EDAHDLLQQQARINTELQEGLMRTRMVPFERMLPRLKRIVRQVAEELGKDVEFIVGNAEG
EMDRNVLERMAAPLEHMLRNAVDHGLESRDARLLAGKPEKGRITLDLTHEGGDIVFDMRD
DGAGVPLEAVRRKAIKRGLLDPNQDISDRDVLQFILQPGFSTAEKITQISGRGVGMDVVH
EEVRQLGGSMVIDSTPGEGVHFRIRLPFTVSVNRALMVQCADDQYAIPLNTIEGLVRVLP
HELAGHYQQDPPRYEYAGQRYELFYLGDLLHTVSRPKLLGHYQPVPVLLVQCNERRVAIH
VDAMAGTREIVVKGLGPQFAGVQGLSGATILGDGRVVLIIDLLAHIRARQPALPAQTADL
PLILNDPLKKRPLLVLVVDDSVTVRKVTSRLLERNGMNVLTAKDGIDALAVLEEHTPDLM
LLDIEMPRMDGFEVATQVRNDPRLMRLPIIMITSRTGQKHRDRAMAIGVNDYLGKPYQES
VLLESIAYWSKSHA