Protein Info for PS417_26495 in Pseudomonas simiae WCS417

Annotation: type III secretion system effector protein exou

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 643 PF01734: Patatin" amino acids 61 to 307 (247 residues), 76.3 bits, see alignment E=3.7e-25 PF20848: ExoU_mid_dom" amino acids 432 to 556 (125 residues), 77.3 bits, see alignment E=1.5e-25

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 79% identity to pfs:PFLU5718)

Predicted SEED Role

"EXOU"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UDL2 at UniProt or InterPro

Protein Sequence (643 amino acids)

>PS417_26495 type III secretion system effector protein exou (Pseudomonas simiae WCS417)
MKVFNAIATLQPSLNKEAFSPTHQTGETPLVEGVGARNVTLLRDHQGRVDVFLSAPAVTS
LVLSGGGAKGIAFSGVVRALEDAQKLEGIQSISGSSAGAISAALIASGMGAQAFDRLSDS
IDLPSLLNSKDVVTAWMQDASSTLGKLVGRLPGAAGNISQLLMTLLPRLQTEALPLEEVI
RNESRQSILEHIAQTPRETRPGEVMHIADKLSAGAAPTFGDLDVLSRHIPAIKQLNITGT
GMFAGRPQLVVFNASLTPQMDIARAAHISGSLPLVFKSPEERGHGFQTSTETTAFKDGGM
LLNTPAPGVVDRAFPESPLTKSESLIVKFESDAADARTRSGSFFSSLADRITGVPHSAAG
AFQDKKLEAFAEQIVTLPLKTEKGDFRGLLTGTVNFTMQDEHKQHLQAKARQAVDAHLER
RSTALERHSFQSLDDAVLAMDDAMLASVQPALQKDPAAADVLTFRKNAQQALHALDGAII
EANQAKGALVFTPKILSALRNLDALARRPEQIDWLGRRLNVASQRNFQQLLQVAAKQIAS
GALPMSKVIGSAVAEMSVRDIAMKAESFTREVIYPSLFRPGQPDANVELLHRAAQDLAWS
STPTEFNRVLDTISDRYKARNKPWDRMSSATTVEQAKAWRVQV