Protein Info for PS417_26490 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 48 to 71 (24 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 128 to 152 (25 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 204 to 224 (21 residues), see Phobius details amino acids 244 to 266 (23 residues), see Phobius details PF01226: Form_Nir_trans" amino acids 32 to 268 (237 residues), 173.8 bits, see alignment E=2e-55

Best Hits

Swiss-Prot: 55% identical to YFDC_ECOLI: Inner membrane protein YfdC (yfdC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 95% identity to pfs:PFLU5717)

Predicted SEED Role

"Putative transport"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U528 at UniProt or InterPro

Protein Sequence (295 amino acids)

>PS417_26490 membrane protein (Pseudomonas simiae WCS417)
MTTDEAGKTPNLSQEEQHDVDKNQPPRAAVLHEIIRTQGDQELERSVAALWWSALAAGLT
MGLSLMAMGLLNSRLPEGEAFKVIASFGYCAGFLAVILARQQLFTENTLTAVLPVMSKPT
LGNAGRLLRLWTVVLVGNLCGTLLVAYVMLHLPIFDTKTDLAFLEIGRKIMENDAGQMFA
KGIISGWMIATMVWMIPSMESAKMFIIILITYLMALGDFTHIVVGSAEVSYLVFAGELAW
KDFWLVFAGPTLAGNIIGGSFIFALISHAQIRSEGSLPDKKAADPRHPQQISKDQ