Protein Info for GFF5149 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: FIG00932594: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 903 PF03993: DUF349" amino acids 418 to 494 (77 residues), 52.8 bits, see alignment E=2.1e-18

Best Hits

KEGG orthology group: None (inferred from 59% identity to del:DelCs14_1899)

Predicted SEED Role

"FIG00932594: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (903 amino acids)

>GFF5149 FIG00932594: hypothetical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSLFSLRKTPSSSNASESAVNTPTPPKPASPNAAHPLDAVTGGAFSAPTSGERAARIRDW
LATGPALEQMNEVFKELSHRDRGAAKPLKEKLDEVKRQKSQEQMSTEWAQKAQGLIDQSR
LNLADALAWQRDAARAGAPLSREPLATLRQALAERVKAIEDLQHRVQVEREAAVLIAQRI
EVLSTKPWRDAQQIAETLRSDVTQWQQQASALSQDPQWPSVDVKFPPMLDGSRQQLQLVW
DAFEAALAQAVAADANPQAPLPAVPVWADELRVARGQDVSAPAEKAPQDKQAQQEKRARA
SAELEQALTVLERELAEGHGKATPKAAADVRGLLKSHGRSIPAALDARAQAALGQAGELE
GWQRWRADQLREELVAKAEALLQAPEGQRLGGRKMQETLRSLRDQWKTTDQGGQPNHALW
KRFDEACTEAHKVVEAWLVQVRQQSEAHKAQRLAIIEELKAWTQSHADSSDWKAQVRELH
AFSERWREAGHLSEKAFADIQPVWKDTMHKAHERLETAQAESTARRKALIEEATALGAAP
MLRIDAVKALQQRWQAEAHTVPLERKHEQKLWEAFRQPIDEAFARKSTEREKAATALNAH
DQRVLDASRALEAASASGDAQRIREAMNELEQALAGQAAAPVAVPTSAEPAAPASAPDAA
PAEAAEAAAADEASAPAAPAKPAAPPKKLVAVRGDDRPGMKKAEPAGRDGRRSDRPDGRR
DGAPGRPDARGGRDARGPGASPWREEREPRGPRLGDAAFRAQRQAIEAAQSSLRKLAAQA
HGEVLTQLMSAWQQRDAEQLPTAQALGSRVSAAHRTAWASAVSKPAAPLSGETLLRLEMA
AEVPTPAEHLSERRMLQLQLLTRRHAAAPTDTWAEDVSAVLGSTFDAAAERRLQNVLKVL
LKR